Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    10:271 11:270 12:269 13:268
	Energy of Broken Structure: -139.1
	Energy of Pseudo-Helices:   -7.4
	Pseudoknot Energy Penalty:  8.1
	Total Free Energy:          -138.4
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -4.8
		Stack = -1.5  for stack of 344-355
		Stack = -2.4  for stack of 345-354
		Stack = -3.4  for stack of 346-353
	Helix total = -7.3
	Hairpin = 3.7  for closure of 347-352
		Stack = -1.5  for stack of 304-323
		Stack = -2.5  for stack of 305-322
		Stack = -3.3  for stack of 306-321
		Stack = -1.4  for stack of 307-320
		Stack = -2.5  for stack of 308-319
		Stack = -2.4  for stack of 309-318
		Stack = -3.3  for stack of 310-317
	Helix total = -16.9
	Hairpin = 3.1  for closure of 311-316
		Stack = -2.4  for stack of 245-297
		Stack = -2.2  for stack of 246-296
		Stack = -3.3  for stack of 247-295
	Helix total = -7.9
	Internal/bulge = 1.5  for closure of 248-294	Size = 10
		Stack = -2.4  for stack of 254-288
		Stack = -2.1  for stack of 255-287
		Stack = -2.4  for stack of 256-286
		Stack = -2.1  for stack of 257-285
	Helix total = -9.0
	Internal/bulge = 5.4  for closure of 258-284	Size = 8
		Stack = -1.4  for stack of 261-277
		Stack = -2.4  for stack of 262-276
		Stack = -2.1  for stack of 263-275
		Stack = -3.4  for stack of 264-274
		Stack = -3.3  for stack of 265-273
	Helix total = -12.6
	Hairpin = 4.2  for closure of 266-272
		Stack = -2.1  for stack of 3-241
		Stack = -2.2  for stack of 4-240
		Stack = -3.3  for stack of 5-239
	Helix total = -7.6
	Internal/bulge = 4.7  for closure of 6-238	Size = 8
		Stack = -3.3  for stack of 15-237
		Stack = -3.3  for stack of 16-236
		Stack = -2.5  for stack of 17-235
		Stack = -1.4  for stack of 18-234
	Helix total = -10.5
	Multiloop = 0.3  for closure of 19-233
		Stack = -3.3  for stack of 50-232
	Helix total = -3.3
	Internal/bulge = 3.2  for closure of 51-231	Size = 3
		Stack = -2.2  for stack of 55-230
	Helix total = -2.2
	Multiloop = 5.0  for closure of 56-229
		Stack = -2.1  for stack of 200-219
		Stack = -2.1  for stack of 201-218
		Stack = -3.3  for stack of 202-217
		Stack = -3.4  for stack of 203-216
		Stack = -2.4  for stack of 204-215
		Stack = -2.4  for stack of 205-214
		Stack = -2.1  for stack of 206-213
	Helix total = -17.8
	Hairpin = 3.1  for closure of 207-212
		Stack = -3.3  for stack of 179-197
		Stack = -2.2  for stack of 180-196
		Stack = -2.1  for stack of 181-195
		Stack = -3.4  for stack of 182-194
		Stack = -2.4  for stack of 183-193
	Helix total = -13.4
	Hairpin = 3.8  for closure of 184-192
		Stack = -3.3  for stack of 72-171
	Helix total = -3.3
	Internal/bulge = 3.3  for closure of 73-170	Size = 2
		Stack = -2.5  for stack of 74-167
		Stack = -3.3  for stack of 75-166
	Helix total = -5.8
	Internal/bulge = 3.2  for closure of 76-165	Size = 3
		Stack = -3.3  for stack of 80-164
		Stack = -3.3  for stack of 81-163
	Helix total = -6.6
	Internal/bulge = 2.3  for closure of 82-162	Size = 1 BP stack across bulge = -1.5
		Stack = -1.3  for stack of 83-160
		Stack = -2.1  for stack of 84-159
		Stack = -3.4  for stack of 85-158
		Stack = -2.1  for stack of 86-157
		Stack = -2.1  for stack of 87-156
		Stack = -2.2  for stack of 88-155
		Stack = -0.9  for stack of 89-154
		Stack = -1.3  for stack of 90-153
		Stack = -2.1  for stack of 91-152
		Stack = -3.4  for stack of 92-151
	Helix total = -20.9
	Internal/bulge = 0.0  for closure of 93-150	Size = 4
		Stack = -0.9  for stack of 96-147
		Stack = -1.0  for stack of 97-146
		Stack = -2.1  for stack of 98-145
		Stack = -3.4  for stack of 99-144
	Helix total = -7.4
	Internal/bulge = 2.0  for closure of 100-143	Size = 4
		Stack = -1.3  for stack of 103-140
		Stack = -1.0  for stack of 104-139
		Stack = -2.1  for stack of 105-138
		Stack = -3.4  for stack of 106-137
		Stack = -2.1  for stack of 107-136
	Helix total = -9.9
	Internal/bulge = 1.9  for closure of 108-135	Size = 2
		Stack = -0.9  for stack of 110-133
		Stack = -1.3  for stack of 111-132
		Stack = -2.1  for stack of 112-131
		Stack = -3.4  for stack of 113-130
		Stack = -3.3  for stack of 114-129
		Stack = -2.1  for stack of 115-128
		Stack = -2.1  for stack of 116-127
		Stack = -2.4  for stack of 117-126
		Stack = -2.2  for stack of 118-125
	Helix total = -19.8
	Hairpin = 4.1  for closure of 119-124
	Helix total = 0.0
	Internal/bulge = 2.4  for closure of 35-49	Size = 1 BP stack across bulge = -1.4
		Stack = -0.5  for stack of 36-47
		Stack = -2.5  for stack of 37-46
		Stack = -3.3  for stack of 38-45
	Helix total = -6.3
	Hairpin = 3.3  for closure of 39-44
		Stack = -2.2  for stack of 20-34
		Stack = -2.1  for stack of 21-33
		Stack = -3.3  for stack of 22-32
		Stack = -3.3  for stack of 23-31
	Helix total = -10.9
	Hairpin = 4.6  for closure of 24-30


	Total energy = -139.1



